the only problem I have w/ persistent root is if you install a home alternative home app it boot loops. probably will undo persistent root if i can find how to and just run everytime I need it.
This is a known issue with many applications for Android. The best way to fix it is to install busybox (instructions and download here): Busybox for android then the fix_Permissions script (download here): http://n0rp.chemlab.org/android/fix_permissions.sh
Pretty much anytime you install a program, just to be safe, run Terminal and enter the command fix_permissions. It seems to correct a lot of problems. Hope this helps.
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